Source code for hbp_nrp_commons.workspace.SimUtil

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"""
This module implements Utility functions used backend
"""
from builtins import object

import os
import errno
import shutil
import logging
import tempfile

from hbp_nrp_backend import NRPServicesGeneralException
from hbp_nrp_commons.workspace.Settings import Settings

__author__ = 'Hossain Mahmud'

logger = logging.getLogger(__name__)


[docs]class SimUtil(object): """ Utility methods for a simulation """
[docs] @staticmethod def makedirs(directory): """ Creates [nested] directory if not exists :raises: all errors except directory exists """ try: os.makedirs(directory) except OSError as e: if e.errno != errno.EEXIST: logger.exception('An error happened trying to create %s', directory) raise
[docs] @staticmethod def mkdir(directory): """ Creates [nested] directory if not exists :raises: all errors except directory exists """ SimUtil.makedirs(directory)
[docs] @staticmethod def rmdir(directory): """ Removes [nested] directory if not exists :raises: all errors except directory exists """ shutil.rmtree(os.path.realpath(directory))
[docs] @staticmethod def clear_dir(directory): """ Deletes contents of a directory """ shutil.rmtree(os.path.realpath(directory)) SimUtil.makedirs(directory)
[docs] @staticmethod def init_simulation_dir(sim_id): """ Creates a temporary directory and links it to Settings.sim_dir_symlink :params sim_id: simulation ID of the simulation we're going to create a temp dir for we embed the sim_id into simulation temp dir so the delete_simulation_dir deletes correctly :returns sim_dir: the full path of the address of temp dir for the simulation """ sim_prefix = 'nrp.{}.'.format(sim_id) sim_dir = tempfile.mkdtemp(prefix=sim_prefix) try: if os.path.exists(Settings.sim_dir_symlink): shutil.rmtree(os.path.realpath(Settings.sim_dir_symlink)) os.unlink(Settings.sim_dir_symlink) os.symlink(sim_dir, Settings.sim_dir_symlink) except (IOError, OSError) as err: raise NRPServicesGeneralException( "Could not access symlink to the temporary simulation folder.", error_type="Backend Error", data=str(err)) return sim_dir
[docs] @staticmethod def delete_simulation_dir(sim_dir=None): """ Removes simulation directory Check that you are deleting the right folder by checking the sim_id """ try: if os.path.exists(Settings.sim_dir_symlink): current_sim_id = SimUtil.extract_sim_id(os.path.realpath(Settings.sim_dir_symlink)) input_sim_id = SimUtil.extract_sim_id(sim_dir) if (current_sim_id == input_sim_id) or (sim_dir is None): shutil.rmtree(os.path.realpath(Settings.sim_dir_symlink)) os.unlink(Settings.sim_dir_symlink) except (IOError, OSError) as error: raise NRPServicesGeneralException( "Could not access symlink to the temporary simulation folder.", error_type="Backend Error", data=str(error))
[docs] @staticmethod def extract_sim_id(sim_dir): """ :param sim_dir: the address of temp folder :return: returns the the sim_id embedded in sim_dir. """ try: base_name = os.path.basename(sim_dir) _, sim_id, _ = base_name.split(".", 2) return sim_id except ValueError: return None
[docs] @staticmethod def find_file_in_paths(file_rel_path, path_list): """ :return: returns the absolute path of the first file found path_list. if not found returns and empty string. """ for file_path in (p for p in path_list if os.path.isfile(os.path.join(p, file_rel_path))): return os.path.join(file_path, file_rel_path) return None